STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g25460DBnaA07g25460D protein. (619 aa)    
Predicted Functional Partners:
BnaA07g25430D
BnaA07g25430D protein.
      
 0.648
BnaC09g13550D
BnaC09g13550D protein.
    
 0.595
BnaC07g18440D
BnaC07g18440D protein.
    
 0.594
BnaCnng45760D
BnaCnng45760D protein.
      
 0.573
BnaA09g46490D
BnaA09g46490D protein.
    
 
 0.572
BnaC04g56750D
BnaC04g56750D protein.
      
 0.572
BnaC04g53300D
BnaC04g53300D protein.
      
 0.572
WRKY53
WRKY transcription factor 53.1.
      
 0.571
BnaA03g55890D
BnaA03g55890D protein.
   
 0.477
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.