Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA07g25460DBnaA07g25460D protein. (619 aa)    
Predicted Functional Partners:
BnaC07g18440D
BnaC07g18440D protein.
     
 0.710
BnaC09g13550D
BnaC09g13550D protein.
    
 0.709
BnaA07g25430D
BnaA07g25430D protein.
      
 0.706
BnaCnng45760D
BnaCnng45760D protein.
      
 0.701
BnaA09g46490D
BnaA09g46490D protein.
      
 0.700
BnaC04g56750D
BnaC04g56750D protein.
      
 0.700
BnaC04g53300D
BnaC04g53300D protein.
      
 0.700
WRKY53
WRKY transcription factor 53.1.
      
 0.564
BnaA03g55890D
BnaA03g55890D protein.
    
 0.444
BnaA07g00650D
BnaA07g00650D protein.
    
  0.409
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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