STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g15520DPatatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family. (475 aa)    
Predicted Functional Partners:
BnaC09g40380D
BnaC09g40380D protein.
      
 0.472
BnaA10g17190D
BnaA10g17190D protein.
      
 0.472
BnaAnng02760D
Phospholipase.
      
 0.468
BnaA07g01090D
BnaA07g01090D protein.
      
 0.457
BnaA09g09940D
BnaA09g09940D protein.
      
 0.457
BnaC02g09080D
BnaC02g09080D protein.
     
 0.452
BnaC07g30920D
BnaC07g30920D protein.
      
 0.444
BnaA08g06610D
BnaA08g06610D protein.
      
 0.444
BnaCnng30060D
BnaCnng30060D protein.
      
 0.444
BnaA09g13590D
Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family.
      
 0.436
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.