STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g05960DBnaA02g05960D protein. (526 aa)    
Predicted Functional Partners:
BnaC09g37700D
BnaC09g37700D protein.
      
 0.497
BnaC05g37200D
BnaC05g37200D protein.
      
 0.459
BnaA03g18370D
BnaA03g18370D protein.
  
     0.440
BnaAnng04340D
BnaAnng04340D protein.
  
     0.440
BnaA02g14670D
BnaA02g14670D protein.
      
 0.435
BnaCnng26250D
BnaCnng26250D protein.
      
 0.435
BnaC03g21890D
BnaC03g21890D protein.
  
     0.427
BnaA03g48350D
BnaA03g48350D protein.
  
     0.426
BnaC03g61230D
BnaC03g61230D protein.
      
 0.418
BnaA04g28190D
BnaA04g28190D protein.
      
 0.418
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.