STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g47880DBnaC03g47880D protein. (69 aa)    
Predicted Functional Partners:
BnaC09g38590D
BnaC09g38590D protein; Belongs to the peptidase A1 family.
  
     0.544
BnaCnng57140D
BnaCnng57140D protein.
  
     0.542
BnaAnng07900D
BnaAnng07900D protein.
  
     0.541
BnaC02g38220D
BnaC02g38220D protein.
  
     0.540
BnaCnng22380D
BnaCnng22380D protein.
  
     0.540
BnaA09g52760D
BnaA09g52760D protein.
  
     0.540
BnaCnng33910D
BnaCnng33910D protein.
  
     0.540
BnaA09g39990D
BnaA09g39990D protein.
  
     0.539
BnaA02g28500D
BnaA02g28500D protein.
  
     0.539
BnaA09g41240D
BnaA09g41240D protein.
  
     0.539
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.