Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g36260DBnaC03g36260D protein; Belongs to the protein kinase superfamily. (390 aa)    
Predicted Functional Partners:
BnaA02g17810D
BnaA02g17810D protein.
      
 0.635
BnaC06g18750D
BnaC06g18750D protein.
      
 0.635
BnaCnng46430D
BnaCnng46430D protein.
      
 0.635
BnaA04g16880D
BnaA04g16880D protein.
      
 0.614
BnaA07g02410D
BnaA07g02410D protein.
     
 0.604
BnaCnng42550D
BnaCnng42550D protein.
     
 0.604
BnaC07g33600D
BnaC07g33600D protein.
      
 0.559
BnaC08g10170D
BnaC08g10170D protein.
      
 0.559
BnaA08g05670D
BnaA08g05670D protein.
      
 0.559
BnaA06g32510D
Membrane-anchored ubiquitin-fold protein; May serve as docking site to facilitate the association of other proteins to the plasma membrane.
      
 0.547
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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