STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g13400DBnaA05g13400D protein. (149 aa)    
Predicted Functional Partners:
BnaA03g12100D
BnaA03g12100D protein.
  
     0.540
BnaCnng64270D
BnaCnng64270D protein.
  
     0.539
BnaAnng06080D
BnaAnng06080D protein.
  
     0.538
BnaCnng69420D
BnaCnng69420D protein.
  
     0.535
BnaA06g34190D
BnaA06g34190D protein.
  
     0.511
BnaC03g62860D
BnaC03g62860D protein.
  
     0.500
BnaC06g40720D
BnaC06g40720D protein.
  
     0.496
BnaC04g08430D
BnaC04g08430D protein.
  
     0.487
BnaC02g47870D
BnaC02g47870D protein.
  
     0.484
BnaA06g34180D
BnaA06g34180D protein.
  
     0.482
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.