STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g19600DBnaC04g19600D protein. (111 aa)    
Predicted Functional Partners:
BnaC02g23320D
BnaC02g23320D protein; Belongs to the SKP1 family.
   
 0.936
BnaA02g17620D
BnaA02g17620D protein; Belongs to the SKP1 family.
   
 0.936
BnaA09g44300D
BnaA09g44300D protein.
    
 
 0.922
BnaA06g13250D
BnaA06g13250D protein.
    
 
 0.922
BnaC05g14810D
BnaC05g14810D protein.
    
 
 0.922
BnaC02g45660D
BnaC02g45660D protein.
    
 
 0.757
BnaCnng08230D
BnaCnng08230D protein.
    
 
 0.718
BnaA02g17040D
BnaA02g17040D protein.
    
 
 0.718
BnaA07g31880D
BnaA07g31880D protein.
    
 
 0.718
BnaA06g11690D
BnaA06g11690D protein.
    
 
 0.714
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.