STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g27230DBnaA05g27230D protein. (417 aa)    
Predicted Functional Partners:
BnaC09g43600D
BnaC09g43600D protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.476
BnaA03g51690D
BnaA03g51690D protein.
    
 
 0.476
BnaAnng20490D
BnaAnng20490D protein.
   
  
 0.473
BnaC07g34120D
BnaC07g34120D protein.
   
  
 0.471
BnaA03g01440D
BnaA03g01440D protein.
   
  
 0.471
BnaA03g53200D
BnaA03g53200D protein.
      
 0.467
BnaC08g49990D
WAT1-related protein.
      
 0.465
BnaA06g37940D
WAT1-related protein.
      
 0.465
BnaAnng26160D
BnaAnng26160D protein.
      
 0.457
BnaAnng40800D
BnaAnng40800D protein.
      
 0.457
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.