STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g27280DBnaA05g27280D protein; Belongs to the syntaxin family. (339 aa)    
Predicted Functional Partners:
BnaC07g31080D
BnaC07g31080D protein.
   
 0.923
BnaAnng06850D
BnaAnng06850D protein.
   
 0.923
BnaC02g42100D
BnaC02g42100D protein.
   
 0.923
BnaA09g45980D
BnaA09g45980D protein.
   
 0.899
BnaCnng15850D
BnaCnng15850D protein.
    
   0.886
BnaA09g35650D
BnaA09g35650D protein.
    
 0.885
BnaC06g15800D
BnaC06g15800D protein.
    
 0.885
BnaC04g55510D
BnaC04g55510D protein.
    
 0.885
BnaA08g05190D
BnaA08g05190D protein.
    
 0.839
BnaA03g01750D
BnaA03g01750D protein; Belongs to the syntaxin family.
    
 0.839
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.