STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g43310DBnaC09g43310D protein. (227 aa)    
Predicted Functional Partners:
BnaA09g03590D
BnaA09g03590D protein.
  
 0.989
BnaC02g39570D
BnaC02g39570D protein.
  
 0.989
BnaAnng11410D
BnaAnng11410D protein.
  
 0.989
BnaC02g02290D
RNA helicase.
   
 0.987
BnaA09g26910D
BnaA09g26910D protein.
   
 
 0.987
BnaA02g10370D
BnaA02g10370D protein; Belongs to the DEAD box helicase family.
   
 0.987
BnaAnng21410D
BnaAnng21410D protein.
   
 
 0.987
BnaCnng77230D
BnaCnng77230D protein.
   
 
 0.986
BnaC04g04050D
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.986
BnaC04g04010D
BnaC04g04010D protein.
   
 
 0.986
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.