STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g11060DDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1619 aa)    
Predicted Functional Partners:
BnaA04g05760D
BnaA04g05760D protein.
    
 0.958
BnaCnng36650D
BnaCnng36650D protein.
    
 0.958
BnaA01g17530D
BnaA01g17530D protein.
    
 0.953
BnaC08g10600D
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.953
BnaA09g02260D
BnaA09g02260D protein.
    
 0.950
BnaC04g32020D
BnaC04g32020D protein.
    
 0.950
BnaC04g26910D
BnaC04g26910D protein.
    
 0.950
BnaA07g04260D
BnaA07g04260D protein.
    
 0.944
BnaA09g08480D
BnaA09g08480D protein.
    
 0.944
BnaCnng39910D
BnaCnng39910D protein.
    
 0.944
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.