STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g28280DBnaA05g28280D protein. (388 aa)    
Predicted Functional Partners:
BnaC04g31160D
BnaC04g31160D protein.
      
 0.545
BnaC06g07690D
Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.
      
 0.539
BnaC07g49770D
BnaC07g49770D protein.
      
 0.477
BnaC07g49850D
BnaC07g49850D protein.
      
 0.477
BnaA02g24540D
BnaA02g24540D protein.
      
 0.472
BnaA02g33570D
BnaA02g33570D protein.
      
 0.470
BnaA04g15660D
BnaA04g15660D protein.
      
 0.470
BnaC03g47290D
BnaC03g47290D protein.
      
 0.470
BnaA04g15650D
BnaA04g15650D protein.
      
 0.470
BnaCnng32450D
BnaCnng32450D protein.
      
 0.470
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.