STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g27800DBnaA05g27800D protein. (247 aa)    
Predicted Functional Partners:
BnaA06g02340D
BnaA06g02340D protein.
   
 
 0.807
BnaC06g04580D
BnaC06g04580D protein.
   
 
 0.807
BnaC01g32310D
BnaC01g32310D protein.
    
 
 0.800
BnaA01g25390D
BnaA01g25390D protein.
    
 
 0.800
BnaC03g63630D
BnaC03g63630D protein.
    
 
 0.790
BnaCnng18610D
BnaCnng18610D protein.
    
 
 0.790
BnaC07g03710D
BnaC07g03710D protein.
    
 
 0.754
BnaC07g03700D
BnaC07g03700D protein.
    
 
 0.754
BnaA09g09480D
BnaA09g09480D protein.
    
 
 0.754
BnaA07g02050D
BnaA07g02050D protein.
    
 
 0.754
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.