STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g05550DBnaA02g05550D protein. (262 aa)    
Predicted Functional Partners:
BnaA05g28210D
BnaA05g28210D protein.
     
 0.504
BnaC03g54810D
BnaC03g54810D protein.
      
 0.478
BnaCnng04010D
BnaCnng04010D protein.
      
 0.478
BnaA04g05330D
BnaA04g05330D protein.
    
 0.468
BnaC01g36080D
BnaC01g36080D protein.
     
 0.467
BnaA01g28890D
BnaA01g28890D protein.
     
 0.467
BnaC05g37810D
BnaC05g37810D protein.
     
 0.467
BnaC03g12860D
BnaC03g12860D protein.
      
 0.461
BnaC09g32700D
BnaC09g32700D protein.
      
 0.461
BnaA02g33940D
BnaA02g33940D protein.
     
 0.461
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.