STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g17270DBnaA05g17270D protein. (206 aa)    
Predicted Functional Partners:
BnaA09g02260D
BnaA09g02260D protein.
   
 0.994
BnaC04g32020D
BnaC04g32020D protein.
   
 0.994
BnaC04g26910D
BnaC04g26910D protein.
   
 0.994
BnaC02g23580D
BnaC02g23580D protein.
   
 0.993
BnaA02g17360D
BnaA02g17360D protein.
   
 0.993
BnaA05g12500D
BnaA05g12500D protein.
  
 0.993
BnaA04g28550D
BnaA04g28550D protein.
  
 0.993
BnaC04g54470D
BnaC04g54470D protein.
  
 0.993
BnaA02g06560D
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.992
BnaA09g05180D
BnaA09g05180D protein.
   
 0.992
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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