STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g15430DBnaA06g15430D protein. (746 aa)    
Predicted Functional Partners:
BnaC09g54540D
BnaC09g54540D protein.
    
 0.978
BnaA01g27960D
BnaA01g27960D protein.
   
 0.977
BnaC06g29960D
BnaC06g29960D protein.
   
 0.975
BnaC05g14140D
BnaC05g14140D protein; Belongs to the actin family.
    
 0.972
BnaA06g12580D
BnaA06g12580D protein; Belongs to the actin family.
    
 0.972
BnaC08g02310D
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.948
BnaA05g16730D
BnaA05g16730D protein.
   
 0.914
BnaC05g29410D
BnaC05g29410D protein.
   
 0.914
BnaC08g21960D
BnaC08g21960D protein.
   
 0.914
BnaC05g16160D
BnaC05g16160D protein.
   
 0.914
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.