STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g44990DBnaC08g44990D protein. (328 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
 0.743
BnaA03g18330D
BnaA03g18330D protein.
    
  0.572
BnaC03g21850D
BnaC03g21850D protein.
    
  0.572
BnaA08g27670D
BnaA08g27670D protein.
      
 0.465
BnaC01g32310D
BnaC01g32310D protein.
    
 0.458
BnaA01g25390D
BnaA01g25390D protein.
    
 0.458
BnaA04g05330D
BnaA04g05330D protein.
    
 0.452
BnaA06g02340D
BnaA06g02340D protein.
    
 0.452
BnaC06g04580D
BnaC06g04580D protein.
    
 0.452
BnaC05g25500D
BnaC05g25500D protein.
    
 0.437
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.