STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA06g24710DBnaA06g24710D protein. (506 aa)    
Predicted Functional Partners:
BnaA06g36920D
BnaA06g36920D protein; Belongs to the peptidase C1 family.
  
  
 0.478
BnaC04g44750D
Carboxypeptidase; Belongs to the peptidase S10 family.
   
  
 0.474
BnaA04g20790D
Carboxypeptidase; Belongs to the peptidase S10 family.
   
  
 0.474
BnaC02g30040D
BnaC02g30040D protein; Belongs to the peptidase C1 family.
  
  
 0.473
BnaA05g14820D
BnaA05g14820D protein.
      
 0.469
BnaC07g49740D
ATP-dependent Clp protease proteolytic subunit.
      
 0.469
BnaA09g16080D
BnaA09g16080D protein.
      
 0.467
BnaC02g41710D
Carboxypeptidase; Belongs to the peptidase S10 family.
   
  
 0.464
BnaA02g32960D
Carboxypeptidase; Belongs to the peptidase S10 family.
   
  
 0.464
BnaA05g10050D
Carboxypeptidase; Belongs to the peptidase S10 family.
   
  
 0.452
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.