STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g44520DBnaC08g44520D protein. (942 aa)    
Predicted Functional Partners:
BnaC03g57810D
BnaC03g57810D protein.
   
 
 0.602
BnaC03g57710D
BnaC03g57710D protein.
   
 
 0.602
BnaC03g57800D
BnaC03g57800D protein.
   
 
 0.602
BnaA08g13640D
BnaA08g13640D protein.
   
 
 0.577
BnaA06g19640D
BnaA06g19640D protein.
   
 
 0.577
BnaA01g08310D
BnaA01g08310D protein.
   
 
 0.577
BnaC01g09860D
BnaC01g09860D protein.
   
 
 0.577
BnaC03g24000D
BnaC03g24000D protein.
   
 
 0.557
BnaC04g52900D
BnaC04g52900D protein.
   
 
 0.557
BnaA05g34390D
BnaA05g34390D protein.
   
 
 0.557
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.