Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g43590DBnaC08g43590D protein. (175 aa)    
Predicted Functional Partners:
BnaA09g06860D
BnaA09g06860D protein.
   
 0.862
BnaC03g12950D
BnaC03g12950D protein.
    
 0.857
BnaA07g07810D
BnaA07g07810D protein.
  
 0.852
BnaA04g11880D
BnaA04g11880D protein; Belongs to the PI3/PI4-kinase family.
    
 0.831
BnaC09g37680D
BnaC09g37680D protein.
    
 0.811
BnaCnng08930D
BnaCnng08930D protein.
  
 0.794
BnaA06g39510D
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
  
 0.794
BnaA06g20800D
BnaA06g20800D protein; Belongs to the PI3/PI4-kinase family.
    
 0.791
BnaAnng27490D
BnaAnng27490D protein.
    
 0.791
BnaA09g20790D
BnaA09g20790D protein.
   
 0.790
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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