Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaCnng03920DBnaCnng03920D protein. (162 aa)    
Predicted Functional Partners:
BnaA06g11340D
BnaA06g11340D protein.
   
 
 0.724
BnaC05g12880D
BnaC05g12880D protein.
   
 
 0.724
BnaA04g26680D
BnaA04g26680D protein.
   
 
 0.688
BnaC04g00860D
BnaC04g00860D protein.
   
 
 0.688
BnaA02g04740D
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
   0.676
BnaA09g55440D
BnaA09g55440D protein.
   
 
 0.665
BnaAnng10790D
BnaAnng10790D protein.
   
 
 0.662
BnaC08g43520D
BnaC08g43520D protein.
   
 
 0.656
BnaCnng28550D
BnaCnng28550D protein.
   
 
 0.652
BnaA07g04030D
BnaA07g04030D protein.
    
   0.648
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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