Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g03400DBnaC05g03400D protein. (266 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
     
  0.667
BnaA03g18330D
BnaA03g18330D protein.
    
  0.615
BnaC03g21850D
BnaC03g21850D protein.
    
  0.615
BnaA03g00190D
BnaA03g00190D protein.
      
 0.570
BnaC03g29660D
BnaC03g29660D protein.
  
     0.510
BnaC03g73190D
BnaC03g73190D protein.
   
  0.504
BnaC01g36190D
BnaC01g36190D protein.
  
     0.503
BnaA02g12550D
BnaA02g12550D protein.
    
 0.496
BnaC06g27710D
BnaC06g27710D protein.
    
 0.496
BnaC02g17020D
BnaC02g17020D protein.
    
 0.496
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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