STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g04520DBnaC05g04520D protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (565 aa)    
Predicted Functional Partners:
BnaC05g26870D
BnaC05g26870D protein.
   
 
 0.955
BnaC02g02640D
BnaC02g02640D protein.
   
 
 0.951
BnaC09g50690D
BnaC09g50690D protein.
   
 
 0.951
BnaA09g41520D
BnaA09g41520D protein.
   
 
 0.944
BnaC06g12970D
BnaC06g12970D protein.
   
 
 0.940
BnaA04g10330D
BnaA04g10330D protein.
   
 
 0.940
BnaC02g02290D
RNA helicase.
   
 
 0.927
BnaA02g10370D
BnaA02g10370D protein; Belongs to the DEAD box helicase family.
   
 
 0.927
BnaA09g26910D
BnaA09g26910D protein.
   
 
 0.926
BnaAnng21410D
BnaAnng21410D protein.
   
 
 0.926
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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