Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g04950DBnaC05g04950D protein; Belongs to the protein kinase superfamily. (455 aa)    
Predicted Functional Partners:
BnaC07g16600D
BnaC07g16600D protein.
  
  
 0.695
BnaA07g37480D
BnaA07g37480D protein.
  
  
0.583
BnaA09g52640D
BnaA09g52640D protein.
  
  
0.580
BnaA05g14660D
BnaA05g14660D protein.
  
 
0.497
BnaC06g10060D
BnaC06g10060D protein.
  
 
0.497
BnaCnng11260D
BnaCnng11260D protein.
  
  
 0.488
BnaA05g08890D
BnaA05g08890D protein.
      
 0.487
BnaA06g32000D
BnaA06g32000D protein; Belongs to the protein kinase superfamily.
  
  
 0.479
BnaC03g27670D
BnaA03g57020D protein; Belongs to the protein kinase superfamily.
  
  
 0.467
BnaC07g34490D
Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.
      
 0.463
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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