STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g29450DBnaC05g29450D protein. (92 aa)    
Predicted Functional Partners:
BnaC09g42470D
BnaC09g42470D protein.
   
 
 0.878
BnaA05g10000D
BnaA05g10000D protein.
    
 
 0.854
BnaCnng05400D
BnaCnng05400D protein.
    
 
 0.854
BnaCnng37640D
BnaCnng37640D protein.
   
 
 0.853
BnaCnng37650D
BnaCnng37650D protein.
   
 
 0.853
BnaC06g43020D
BnaC06g43020D protein.
    
 
 0.837
BnaC06g43030D
BnaC06g43030D protein.
    
 
 0.837
BnaCnng55160D
BnaCnng55160D protein.
    
 
 0.837
BnaC04g01660D
BnaC04g01660D protein.
    
 
 0.738
BnaA09g36030D
BnaA09g36030D protein.
    
 
 0.738
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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