STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g16660DBnaA05g16660D protein. (856 aa)    
Predicted Functional Partners:
BnaA09g00260D
BnaA09g00260D protein.
  
 
 
 0.710
BnaA02g08000D
BnaA02g08000D protein.
  
   
 0.682
BnaA09g31070D
BnaA09g31070D protein.
  
 
 0.619
BnaA03g54050D
BnaA03g54050D protein.
  
 
 
 0.615
BnaA09g01200D
BnaA09g01200D protein.
  
   
 0.509
BnaC04g21970D
BnaC04g21970D protein.
  
     0.506
BnaCnng48370D
BnaCnng48370D protein.
  
 
0.503
BnaA07g00670D
BnaA07g00670D protein.
  
 
0.502
BnaC09g00370D
BnaC09g00370D protein.
  
   
 0.500
BnaCnng19200D
BnaCnng19200D protein.
  
     0.494
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.