Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA02g06540DBnaA02g06540D protein. (386 aa)    
Predicted Functional Partners:
BnaA02g24620D
BnaA02g24620D protein.
      
 0.620
BnaC04g00940D
BnaC04g00940D protein.
      
 0.513
BnaA02g34230D
BnaA02g34230D protein.
      
 0.475
BnaC02g43130D
BnaC02g43130D protein.
      
 0.475
BnaAnng15070D
BnaAnng15070D protein.
      
 0.475
BnaCnng33260D
BnaCnng33260D protein.
      
 0.471
BnaA06g35990D
BnaA06g35990D protein.
      
 0.467
BnaA02g24490D
BnaA02g24490D protein.
      
 0.467
BnaC03g54780D
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
      
 0.456
BnaC04g19550D
BnaC04g19550D protein; Belongs to the peptidase S8 family.
      
 0.444
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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