Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g11700DBnaA05g11700D protein. (224 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
   
 0.840
BnaA09g44210D
BnaA09g44210D protein.
    
 
 0.773
BnaA06g13460D
BnaA06g13460D protein.
    
 
 0.773
BnaA06g13620D
BnaA06g13620D protein.
    
 
 0.773
BnaCnng08150D
BnaCnng08150D protein.
    
 
 0.749
BnaA02g17120D
BnaA02g17120D protein.
    
 
 0.749
BnaA02g17130D
BnaA02g17130D protein.
    
 
 0.749
BnaCnng34980D
BnaCnng34980D protein.
    
 
 0.749
BnaAnng32010D
BnaAnng32010D protein.
    
 
 0.749
BnaC03g30360D
Serine/threonine-protein phosphatase.
    
 0.737
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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