Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g14360DBnaC01g14360D protein. (999 aa)    
Predicted Functional Partners:
BnaC01g24000D
BnaC01g24000D protein.
   
 
 0.820
BnaAnng03490D
BnaAnng03490D protein.
   
 
 0.820
BnaA03g01520D
BnaA03g01520D protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.812
BnaAnng07160D
BnaAnng07160D protein.
    
 
 0.812
BnaCnng14630D
BnaCnng14630D protein.
    
 
 0.806
BnaAnng25090D
BnaAnng25090D protein.
    
 
 0.806
BnaAnng41980D
BnaAnng41980D protein.
    
 
 0.806
BnaCnng18680D
BnaCnng18680D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.587
BnaC05g49040D
BnaC05g49040D protein.
    
 
 0.575
BnaA02g24130D
BnaA02g24130D protein; Belongs to the peptidase C1 family.
      
 0.570
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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