Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC05g23360DBnaC05g23360D protein. (1187 aa)    
Predicted Functional Partners:
BnaC01g41130D
RING-type E3 ubiquitin transferase.
      
 0.664
BnaAnng24290D
RING-type E3 ubiquitin transferase.
      
 0.664
BnaC03g64050D
BnaC03g64050D protein.
      
 0.635
BnaC05g01150D
BnaC05g01150D protein.
      
 0.634
BnaC05g37760D
BnaC05g37760D protein.
      
 0.614
BnaC01g41210D
BnaC01g41210D protein.
      
 0.614
BnaC04g18840D
COX assembly mitochondrial protein.
     
 0.536
BnaA03g58490D
COX assembly mitochondrial protein.
     
 0.536
BnaC03g64350D
COX assembly mitochondrial protein.
     
 0.536
BnaC01g41100D
BnaC01g41100D protein.
      
 0.535
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.