STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g14260DBnaC03g14260D protein. (339 aa)    
Predicted Functional Partners:
BnaA04g05330D
BnaA04g05330D protein.
    
  0.621
BnaA06g20670D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.525
BnaC03g57240D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.525
BnaA06g17120D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.525
BnaCnng62340D
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.525
BnaA09g08180D
BnaA09g08180D protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.508
BnaA02g34890D
BnaA02g34890D protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.508
BnaC02g45110D
BnaC02g45110D protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.508
BnaCnng44950D
BnaCnng44950D protein.
    
 0.507
BnaA09g09920D
BnaA09g09920D protein.
    
 0.503
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.