Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g69970DBnaC03g69970D protein. (396 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
 0.789
BnaA06g39650D
BnaA06g39650D protein; Belongs to the disease resistance NB-LRR family.
     
 0.688
BnaA03g18330D
BnaA03g18330D protein.
   
  0.611
BnaC03g21850D
BnaC03g21850D protein.
   
  0.611
BnaA07g00650D
BnaA07g00650D protein.
   
 
 0.585
BnaC06g03330D
BnaC06g03330D protein.
    
   0.563
BnaA02g14580D
BnaA02g14580D protein.
     
 0.504
BnaA06g36240D
Nuclear cap-binding protein subunit 2.
    
  0.494
BnaC01g15000D
BnaC01g15000D protein.
    
 
 0.473
BnaA03g45970D
BnaA03g45970D protein.
    
 
 0.473
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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