Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g23930DBnaC06g23930D protein. (381 aa)    
Predicted Functional Partners:
BnaC08g11590D
BnaC08g11590D protein.
  
    0.512
BnaCnng24750D
BnaCnng24750D protein.
   
  
 0.501
BnaCnng19450D
BnaCnng19450D protein.
      
 0.495
BnaC03g64400D
BnaC03g64400D protein.
      
 0.487
BnaA03g58550D
BnaA03g58550D protein.
      
 0.487
BnaC03g61020D
BnaC03g61020D protein.
      
 0.461
BnaA04g26140D
BnaA04g26140D protein.
      
 0.450
BnaC04g53130D
BnaC04g53130D protein.
      
 0.450
BnaC04g56930D
BnaC04g56930D protein.
      
 0.450
BnaC03g26990D
BnaC03g26990D protein.
  
     0.443
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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