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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA05g12020DBnaA05g12020D protein. (1150 aa)    
Predicted Functional Partners:
BnaA03g51930D
BnaA03g51930D protein.
    
 0.762
BnaC06g00270D
BnaC06g00270D protein.
    
 0.762
BnaC06g00060D
BnaC06g00060D protein.
    
 0.762
BnaA01g28370D
BnaA01g28370D protein.
    
 0.762
BnaA01g28380D
BnaA01g28380D protein.
    
 0.762
BnaC01g35630D
BnaC01g35630D protein.
    
 0.762
BnaA09g47330D
BnaA09g47330D protein.
    
 0.762
BnaC07g32760D
BnaC07g32760D protein.
    
 0.762
BnaCnng10240D
BnaCnng10240D protein.
   
 
 0.761
BnaA03g18330D
BnaA03g18330D protein.
    
 0.760
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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