STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g24900DFRIGIDA-like protein; Belongs to the Frigida family. (445 aa)    
Predicted Functional Partners:
BnaC04g54610D
BnaC04g54610D protein.
  
   
 0.519
BnaC08g09340D
BnaC08g09340D protein.
    
 
 0.517
BnaCnng11040D
BnaCnng11040D protein.
    
 
 0.517
BnaAnng11220D
BnaAnng11220D protein.
    
 
 0.517
BnaA05g12230D
BnaA05g12230D protein.
  
   
 0.514
BnaC04g48270D
BnaC04g48270D protein.
  
     0.503
BnaA04g24460D
BnaA04g24460D protein.
  
     0.502
BnaC04g52740D
BnaC04g52740D protein.
  
     0.499
BnaCnng61180D
BnaCnng61180D protein.
  
     0.487
BnaA05g09820D
BnaA05g09820D protein.
      
 0.485
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.