STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC01g15170DBnaC01g15170D protein. (192 aa)    
Predicted Functional Partners:
BnaC09g11740D
BnaC09g11740D protein.
      
 0.532
BnaA09g11300D
BnaA09g11300D protein.
      
 0.532
BnaC07g24750D
BnaC07g24750D protein.
      
 0.532
BnaA02g29070D
BnaA02g29070D protein.
      
 0.532
BnaA03g53120D
BnaA03g53120D protein; Belongs to the peroxidase family.
     
 0.523
BnaA01g23410D
BnaA01g23410D protein.
      
 0.521
BnaC08g43440D
BnaC08g43440D protein.
      
 0.520
BnaC04g13200D
BnaA02g06370D protein.
      
 0.520
BnaC03g35780D
BnaC03g35780D protein.
      
 0.514
BnaC06g14170D
BnaC06g14170D protein.
      
 0.514
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.