STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA03g00180DBnaA03g00180D protein. (676 aa)    
Predicted Functional Partners:
BnaA04g17380D
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.648
BnaCnng05490D
Potassium transporter; Potassium transporter; Belongs to the HAK/KUP transporter (TC 2.A.72.3) family.
      
 0.495
BnaA05g17020D
BnaA05g17020D protein.
    
 
 0.494
BnaC05g29870D
BnaC05g29870D protein.
    
 
 0.494
BnaC05g48230D
BnaC05g48230D protein; Belongs to the sterol desaturase family.
      
 0.477
BnaA05g33480D
BnaA05g33480D protein; Belongs to the sterol desaturase family.
      
 0.477
BnaAnng24600D
BnaAnng24600D protein; Belongs to the sterol desaturase family.
      
 0.477
BnaAnng24610D
BnaAnng24610D protein; Belongs to the sterol desaturase family.
      
 0.477
BnaCnng03860D
BnaCnng03860D protein.
      
 0.469
BnaC03g70920D
BnaC03g70920D protein.
      
 0.469
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.