Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g31680DBnaC06g31680D protein. (2213 aa)    
Predicted Functional Partners:
BnaA08g27450D
BnaA08g27450D protein.
     
 0.522
BnaCnng43130D
BnaCnng43130D protein.
     
 0.522
BnaC08g46420D
BnaC08g46420D protein.
     
 0.522
BnaC05g08280D
BnaC05g08280D protein.
      
 0.504
BnaAnng26660D
BnaAnng26660D protein.
    
 
 0.502
BnaC02g22740D
BnaC02g22740D protein.
     
 0.481
BnaC04g01980D
BnaC04g01980D protein.
      
 0.475
BnaA06g33710D
BnaA06g33710D protein.
      
 0.471
BnaCnng59270D
BnaCnng59270D protein.
      
 0.471
BnaC08g11650D
BnaC08g11650D protein.
      
 0.470
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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