STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g39630DBnaA09g39630D protein. (39 aa)    
Predicted Functional Partners:
BnaC02g44550D
BnaC02g44550D protein.
  
     0.536
BnaC09g13590D
BnaC09g13590D protein.
  
     0.533
BnaC01g22970D
BnaC01g22970D protein.
  
     0.527
BnaA09g08600D
BnaA09g08600D protein.
  
     0.523
BnaA08g25290D
BnaA08g25290D protein.
  
     0.521
BnaC03g57720D
BnaC03g57720D protein.
  
     0.520
BnaC03g57820D
BnaC03g57820D protein.
  
     0.517
BnaAnng05820D
BnaAnng05820D protein.
  
     0.517
BnaCnng17940D
BnaCnng17940D protein.
  
     0.517
BnaC03g41500D
BnaC03g41500D protein.
  
     0.515
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.