Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g12870DBnaC03g12870D protein. (1034 aa)    
Predicted Functional Partners:
BnaA10g07060D
BnaA10g07060D protein.
      
 0.585
BnaC09g53210D
BnaC09g53210D protein.
      
 0.585
BnaA10g09860D
BnaA10g09860D protein.
      
 0.584
BnaA02g08940D
BnaA02g08940D protein.
      
 0.584
BnaC09g32300D
BnaC09g32300D protein.
      
 0.584
BnaA01g28760D
BnaA01g28760D protein.
      
 0.482
BnaC01g36260D
BnaC01g36260D protein.
      
 0.482
BnaA06g23770D
BnaA06g23770D protein.
      
 0.442
BnaC03g49450D
BnaC03g49450D protein.
      
 0.442
BnaC02g02650D
BnaC02g02650D protein.
      
 0.442
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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