STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g31500DBnaC06g31500D protein. (318 aa)    
Predicted Functional Partners:
BnaC04g47780D
Nuclear pore protein.
  
    0.531
BnaC07g00030D
BnaC07g00030D protein.
  
   0.514
BnaA07g00680D
BnaA07g00680D protein.
  
   0.513
BnaC01g31300D
BnaC01g31300D protein.
  
     0.509
BnaA04g15100D
BnaA04g15100D protein.
  
   0.506
BnaA10g03560D
BnaA10g03560D protein.
  
     0.506
BnaC03g66730D
BnaC03g66730D protein.
  
     0.505
BnaC03g66740D
BnaC03g66740D protein.
  
     0.504
BnaA08g11880D
BnaA08g11880D protein.
  
     0.503
BnaC05g03480D
BnaC05g03480D protein.
  
     0.502
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.