Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g12920DBnaC06g12920D protein. (650 aa)    
Predicted Functional Partners:
BnaC05g08280D
BnaC05g08280D protein.
      
 0.753
BnaA09g30180D
BnaA09g30180D protein.
      
 0.688
BnaA09g22870D
BnaA09g22870D protein.
    
 0.627
BnaAnng12880D
BnaAnng12880D protein.
    
 0.627
BnaC02g38180D
BnaC02g38180D protein.
     
 0.596
BnaAnng07880D
BnaAnng07880D protein.
     
 0.596
BnaA09g52260D
BnaA09g52260D protein.
     
 0.596
BnaC04g12610D
BnaC04g12610D protein.
      
 0.590
BnaA05g35130D
BnaA05g35130D protein.
      
 0.590
BnaA01g07950D
BnaA01g07950D protein.
    
 0.504
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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