STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC08g08430DBnaC08g08430D protein. (136 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
 0.517
BnaCnng32420D
BnaCnng32420D protein.
    
 0.516
BnaA03g18330D
BnaA03g18330D protein.
    
 0.512
BnaC03g21850D
BnaC03g21850D protein.
    
 0.512
BnaA07g36440D
BnaA07g36440D protein.
  
     0.488
BnaA09g38510D
BnaA09g38510D protein.
   
 
 0.481
BnaC06g42760D
BnaC06g42760D protein.
   
 
 0.481
BnaA07g04030D
BnaA07g04030D protein.
    
   0.476
BnaA09g15920D
BnaA09g15920D protein.
  
 
  0.473
BnaA06g16780D
BnaA06g16780D protein.
  
     0.462
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.