Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BnaC06g31160DBnaC06g31160D protein. (418 aa)    
Predicted Functional Partners:
BnaA07g00650D
BnaA07g00650D protein.
    
  0.555
BnaA07g38390D
BnaA07g38390D protein.
   
   0.506
BnaA02g23870D
Pectin acetylesterase; Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties; Belongs to the pectinacetylesterase family.
      
 0.504
BnaC02g26210D
BnaC02g26210D protein.
  
     0.504
BnaA04g27440D
Pectin acetylesterase; Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties; Belongs to the pectinacetylesterase family.
      
 0.504
BnaA02g36490D
Methyltransferase.
      
 0.498
BnaA01g24490D
BnaA01g24490D protein.
  
     0.475
BnaCnng39060D
BnaCnng39060D protein.
  
 
  0.472
BnaC03g64750D
BnaC03g64750D protein.
  
 
  0.470
BnaC01g40310D
BnaC01g40310D protein.
  
 
  0.469
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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