STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC06g31160DBnaC06g31160D protein. (418 aa)    
Predicted Functional Partners:
BnaC02g26210D
BnaC02g26210D protein.
  
     0.504
BnaC01g40310D
BnaC01g40310D protein.
  
 
  0.490
BnaA01g24490D
BnaA01g24490D protein.
  
     0.475
BnaCnng39060D
BnaCnng39060D protein.
  
 
  0.473
BnaC03g64750D
BnaC03g64750D protein.
  
 
  0.471
BnaCnng65600D
BnaCnng65600D protein.
  
     0.465
BnaC08g11580D
BnaC08g11580D protein.
  
 
  0.462
BnaC06g09930D
BnaC06g09930D protein.
  
 
  0.461
BnaCnng14160D
BnaCnng14160D protein.
  
 
  0.460
BnaC03g62030D
BnaC03g62030D protein.
  
     0.454
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.