STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC07g16520DBnaC07g16520D protein. (697 aa)    
Predicted Functional Partners:
BnaC08g11760D
BnaC08g11760D protein.
    
  0.456
BnaA03g46880D
BnaA03g46880D protein.
    
  0.456
BnaA08g14650D
BnaA08g14650D protein.
    
  0.456
BnaA01g14050D
BnaA01g14050D protein.
    
  0.456
BnaA05g14660D
BnaA05g14660D protein.
  
 
0.415
BnaC06g10060D
BnaC06g10060D protein.
  
 
0.413
BnaC03g65340D
BnaC03g65340D protein.
    
 
 0.404
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.