Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BnaA08g14260DMitogen-activated protein kinase kinase kinase 16.1; Belongs to the protein kinase superfamily. (471 aa)    
Predicted Functional Partners:
BnaC04g26840D
BnaC04g26840D protein.
      
 0.614
BnaA09g55100D
BnaA09g55100D protein.
      
 0.514
BnaA02g21510D
BnaA02g21510D protein.
      
 0.511
BnaC04g15230D
BnaC04g15230D protein; Belongs to the protein kinase superfamily.
  
  
0.502
BnaC06g10060D
BnaC06g10060D protein.
  
 
0.496
BnaA05g14660D
BnaA05g14660D protein.
  
 
0.495
BnaCnng55610D
BnaCnng55610D protein; Belongs to the protein kinase superfamily.
  
  
  0.469
BnaA09g28500D
BnaA09g28500D protein.
  
  
  0.462
BnaC04g49200D
BnaC04g49200D protein.
  
  
  0.461
BnaA04g25350D
BnaA04g25350D protein.
  
  
  0.458
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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