STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaA09g16960DBnaA09g16960D protein. (156 aa)    
Predicted Functional Partners:
BnaC04g11390D
BnaC04g11390D protein.
  
     0.540
BnaC06g07360D
BnaC06g07360D protein.
  
     0.534
BnaC01g29710D
BnaC01g29710D protein.
  
     0.495
BnaC02g30120D
BnaC02g30120D protein.
  
     0.475
BnaC04g31350D
BnaC04g31350D protein.
  
     0.472
BnaA05g19500D
BnaA05g19500D protein.
  
     0.467
BnaCnng07090D
BnaCnng07090D protein.
  
     0.463
BnaA06g03150D
BnaA06g03150D protein.
  
     0.460
BnaUnng00680D
BnaUnng00680D protein.
  
     0.459
BnaC01g23430D
BnaC01g23430D protein.
  
     0.456
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.