Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BnaC03g60590DBnaC03g60590D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1070 aa)    
Predicted Functional Partners:
BnaC02g28720D
BnaC02g28720D protein.
    
 0.991
BnaC03g65340D
BnaC03g65340D protein.
    
0.943
BnaC03g66580D
BnaC03g66580D protein.
    
 0.893
BnaA08g11770D
BnaA08g11770D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
 0.893
BnaA03g52520D
BnaA03g52520D protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
 0.893
BnaC05g00340D
BnaC05g00340D protein.
   
0.879
BnaA09g51800D
BnaA09g51800D protein.
   
0.879
BnaC03g47420D
BnaC03g47420D protein.
    
0.856
BnaC09g09220D
BnaC09g09220D protein.
    
0.856
BnaA09g08960D
BnaA09g08960D protein.
    
0.856
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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