STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC09g24200DBnaC09g24200D protein. (201 aa)    
Predicted Functional Partners:
BnaA07g08960D
BnaA07g08960D protein.
  
 
 0.803
BnaC03g57540D
BnaC03g57540D protein.
   
 
0.699
BnaA07g08950D
BnaA07g08950D protein.
   
 
0.699
BnaA09g28040D
BnaA09g28040D protein.
   
 
0.699
BnaAnng21750D
BnaAnng21750D protein.
   
 
0.699
BnaCnng61410D
BnaCnng61410D protein.
  
   
 0.658
BnaC09g42060D
BnaC09g42060D protein.
   
 
0.581
HIN1
Hairpin-induced 1-like protein NHL18A.
  
   
 0.522
BnaC09g13080D
BnaC09g13080D protein.
  
     0.520
BnaC06g30670D
BnaC06g30670D protein.
  
    0.520
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.