STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BnaC04g26560DBnaC04g26560D protein. (183 aa)    
Predicted Functional Partners:
BnaA07g04030D
BnaA07g04030D protein.
    
 0.743
BnaA03g18330D
BnaA03g18330D protein.
    
  0.572
BnaC03g21850D
BnaC03g21850D protein.
    
  0.572
BnaA04g21640D
BnaA04g21640D protein.
  
 
 0.542
BnaC05g48200D
BnaC05g48200D protein.
  
     0.496
BnaC07g49980D
BnaC07g49980D protein.
  
     0.488
BnaCnng60460D
BnaCnng60460D protein.
  
 
  0.481
BnaA01g28140D
BnaA01g28140D protein.
  
     0.479
BnaC01g44350D
BnaC01g44350D protein.
  
     0.479
BnaC05g37190D
BnaC05g37190D protein.
  
     0.478
Your Current Organism:
Brassica napus
NCBI taxonomy Id: 3708
Other names: B. napus, oilseed rape, rape, rapeseeds
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.